Manual for Recipes and Modules

There are two types of nextflow nextflow scripts in this repository. Modules contains components for simple tasks, while recipes are complex workflows. The recipes can be direcly used with nextflow run main.nf -entry, while the modules serve as components for recipes.

This section documents the usage of those modules. Available parameters will be listed for each module file, and the input/output specification will be listed for each process or workflow.